Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015845790.1_cds_XP_016509445.1_22378
CDS Infomation

[gene=LOC107826915] [db_xref=GeneID:107826915] [protein=vacuolar protein sorting-associated protein 18 homolog] [protein_id=XP_016509445.1] [location=join(15318..15480,18008..18220,18334..18473,18665..18760,19579..19646,20473..20574,20836..20980,22038..22181,22274..22393,22541..22597,23323..23382,24391..24519)] [gbkey=CDS]
Sequence

ATGGAAAGAAGACATCAGGTTTTCTCTGTAGATCTTCTTGAAAGATATGCCACAAAAGGC
CGTGGAGCCATTACATGCATGGCGACCGGCAATGATGTCATAGTTCTGGGAACTAGCAAA
GGCTGGGTAATCAGACATGACTTTGGAGTGGGTGATTCTTATGATATAGATCTTTCTGTT
GGCAGGCCTGGGGAACAATCTGTTCATAAGGTTTTCGTTGACCCTGGAGGGAGTCACTGT
ATTGCCACTGTTATTGGCAGTAGTGGTGCCGATACATATTATACTCATGCTAAATGGACA
AAGCCTCGAATTTTAAGCAAATTAAAAGGTCTTGTTGTCAATGCTGTTGCCTGGAATAGA
CAACATATAACAGAAGCTTCAACTAGAGAAATCATTATGGGTACGGACAATGGTCAACTT
TATGAGATGGCTGTAGATGTAAAGGATAAAATGGAGAAGTACGTAAAGTTACTGTTTGAA
CTTAAAGAACTACCTGAGGCTTTCACCGGTTTGCAGATGGAAACAGCAAGTGTGCACAAT
GGTACCAGATTTTATGTGATGGCTGTTACACCTACTCGACTTTATTCGTTCACAGGGATT
GGCTCGCTTGAAGCTGTTTTTGCAAGCTATGTGGACCGTACAGTTCATTTCATGGAACTT
CCTGGTGAAATACCTAATAGTGAACTGCACTTTTTTATCAAGCAAAGGAGGGCTGTACAC
TTCGCATGGCTTTCTGGAGCAGGAATCTACCATGGTGACCTAAAATTTGGAGTGCAACAT
AGTTCGCCAAACGGGGATGAAAACTTTGTGGAAAACAAAGCTCTTCTGGACTACTCTAAA
TTCTCTGAAGGAGTTGAAGGTGTCAAACCTAGCTCTCTGGCTGTATCCGAGTTTCATTTC
CTACTTCTCATAGGTAACAAGGTTAAGGTGGTGAACCGGATAAGTGAACAAATAGTAGAA
GAACTTTATTTTGATCAGACACCTGATGCAGTTTCAAGAGGTATTTTTGGCTTATGTAGT
GATGCCTCAGCTGGGTTGTTTTATGCATATGACCAAAATTCCATCTTCCAGGTGTCTGTA
AATGATGAAGGCCGTGACATGTGGAAAGTGTACTTGGACTTAAAAGAATATGCTGCAGCT
TTGGCTAATTGTCGTGATGCCCTGCAGAGAGACCAAGTTTATCTGGTTCAGGCTGAAGCT
GCTTTTGCTGCCAAGGAGTTCCTCAGAGCTGCATCATTCTATGCAAAAATTAACTATGTG
TTATCATTTGAAGAGATCTCATTGAAGTTCATTAGCATAGGTGAACAGGATGCATTGAGA
ACATTTCTCCTGCGGAAGCTTGATAATCTTTCAAAGGATGAAAAGTGCCAAATAACAATG
ATTTCCACATGGGCAACTGAATTATATCTTGATAAGGTTCATCTCTTTTTGAACTGA

Peptide Sequence

PEP ID

XP_016509445.1
PEP Infomation

PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Nicotiana tabacum]
Sequence

MERRHQVFSVDLLERYATKGRGAITCMATGNDVIVLGTSKGWVIRHDFGVGDSYDIDLSV
GRPGEQSVHKVFVDPGGSHCIATVIGSSGADTYYTHAKWTKPRILSKLKGLVVNAVAWNR
QHITEASTREIIMGTDNGQLYEMAVDVKDKMEKYVKLLFELKELPEAFTGLQMETASVHN
GTRFYVMAVTPTRLYSFTGIGSLEAVFASYVDRTVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGAGIYHGDLKFGVQHSSPNGDENFVENKALLDYSKFSEGVEGVKPSSLAVSEFHF
LLLIGNKVKVVNRISEQIVEELYFDQTPDAVSRGIFGLCSDASAGLFYAYDQNSIFQVSV
NDEGRDMWKVYLDLKEYAAALANCRDALQRDQVYLVQAEAAFAAKEFLRAASFYAKINYV
LSFEEISLKFISIGEQDALRTFLLRKLDNLSKDEKCQITMISTWATELYLDKVHLFLN

Transcript Sequence

Gene sequence data has not been registered.